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Sequence
Trace Modeler for UML Sequence Diagrams 1.2
Trace Modeler is an easy to use and smart editor for UML sequence diagrams... Ideal for documenting existing systems and brainstorming new designs... And fast too! It instantly updates the diagram layout, freeing you to focus on the actual content... The look of your diagrams is controlled by style settings and easily changed... Your diagrams are always visually pleasing and structurally correct... It will save you a tremendous amount of time!
Released: 2007-12-04
Last Updated: 2008-06-20
License: $119.00
Publisher: Yanic Inghelbrecht
Language: English
Platform: Windows
Requirements: Java 5 Run-time Environment (JRE) or better
Install: Uninstall Only
BioSeqAnalyzer 1.0
BioSeqAnalyzer is a bioinformatics software tool for analyzing DNA and protein sequences. The registered version, supports the following operations: Scoring alignment. Linear global alignment. Affine global alignment. Local alignment. Multiple alignment. Hidden Markov Models profiles. Aligning to Hidden Markov Models profiles. Composition-based classification. Profile-based classification.
Released: 2006-02-05
License: $30.00
Publisher: BioSeqAnalyzer
Language: English
Platform: Windows
Requirements: Win32
Install: Install and Uninstall
Countdown Sequencer 1.0
Time and sequence a series of events. Perfect for radio talent needing to time a sequence of events. Will start the sequence at a specific time or now. For example, 10 minutes intro, 18 minutes for the body and then 12 minutes for the conclusion of the sequence.
Released: 2004-12-21
License: $29.95
Publisher: Contact Plus Corporation
Language: English
Platform: Windows
Install: Install and Uninstall

works for me This program works well for my needs. I am not very computer savy and I found it easy to set up and use. If it had a calendar feature it would be...

DNA BASER 2.10
www.DNABaser.com Easy to use aligner software for DNA sequence assembly, contig editing, and mutation detection for Windows. It is a molecular biology software that can view and assemble sequences in contigs.Features: end clip, export sequences, assemblies, code detection. DNA Baser is an affordable alternative for assembly of DNA sequences and generation of contigs. File formats supported are abi, scf and seq (or FASTA). Features: end clip, export,auto trim...
Released: 2006-12-17
Last Updated: 2008-07-04
License: $490.00
Publisher: CubicDesign
Language: English, German
Platform: Windows, MAC
Requirements: CPU: 333MHz, 64MB RAM, Video 1024x768, 2MB HDD free space
Install: Install and Uninstall

first toughts I loaded two sets of abi files, which are suppossed to form two contigs. (These two contings should form one finally, after some steps of chromose...

DNA Screen saver 3.0.2
Biology screensaver for DNA Baser. Easy to use aligner software for DNA sequence assembly, contig editing, and mutation detection for Windows. It is a molecular biology software that can view and assemble sequences in contigs.Features: end clip, export sequences, assemblies, code detection. DNA Baser is an affordable alternative for assembly of DNA sequences and generation of contigs. File formats supported are abi, scf and seq (or FASTA).
Last Updated: 2008-04-30
License: Freeware
Publisher: CubicDesign
Language: English, German
Platform: Windows, MAC
Requirements: CPU: 333MHz, 64MB RAM, Video 1024x768, 2MB HDD free space
Install: Install and Uninstall
EventStudio System Designer 4.0
EventStudio System Designer 4.0, a use case and sequence diagram based systems engineering and architecture design tool that runs on Windows. EventStudio takes a different approach to modeling. Users model the system in a text based modeling language. EventStudio analyzes the model for design errors and automatically generates use case and sequence diagrams.
Released: 2007-07-30
Last Updated: 2008-02-23
License: $299.00
Publisher: EventHelix.com Inc.
Language: English
Platform: Windows
Requirements: 128 MB RAM, Adobe Acrobat Reader 5.0 or greater
Install: Install and Uninstall
PatternDiffer 1.2
With PatterDiffer you´ve got the possibility to find equal data sequences in two different files. You can see the result in a tabular display with textual and hexadecimal view. The result can be exported to a XML-File for further automated processes. Since the data is analysed on a binary level its structure is not important for the analysis. Simplified you can say that PatternDiffer analyses of the largest connected sequences of two file.
Released: 2006-04-18
License: $59.00
Publisher: metholution software
Language: English, German
Platform: Windows
Install: Install and Uninstall
Advanced Protein Sequence Converter 1.0
Program allows to convert protein sequence from different formats (as Fasta, PDB, Swiss-protein, Swiss-DNA) to another ones (as Fasta, Swiss-protein and Pure amino acid sequence). You should not think about input format at all. You can simply select all input files and program can recognize automatically in one step each file that contains amino acid sequence. Then you can export some or all sequences to the requested format also in one step.
License: $30.00
Publisher: Protein Systems Ltd.
Language: English
Platform: Windows
Requirements: Win95/98/Me/NT4.0/2000/XP
Install: Install and Uninstall
Bio2MIDI 2.1
Bio2Midi converts the text of a DNA or protein sequence to a MIDI file, which you may immediately audition, or import into any MIDI sequencer for further compositional processing. Choose to listen to the sequences as 4-note DNA bases, or as 20-note protein amino acids, or both at once. You can select specific data sections to be translated, called exons and introns, and mark areas of interest to be played in a different instrument.
Released: 2007-02-13
License: Freeware
Publisher: Algorithmic Arts
Language: English
Platform: Windows
Requirements: 64 MB RAM, Hi Color display, MIDI or Sound Card
Install: Install and Uninstall
MaintainJ Plugin 2.1
MaintainJ, an Eclipse plug-in, generates runtime UML sequence and class diagrams for a given use case, helping the users to quickly understand a complex Java application. MaintainJ logs runtime method execution sequence to a file and uses that trace file to render sequence and class diagrams. MaintainJ Instrumentation Wizard instruments a Java/J2EE application and MaintainJ UML Editor renders sequence and class diagram from the trace file.
Released: 2007-08-13
License: $100.00
Publisher: MaintainJ Inc.
Language: English
Platform: JAVA
Install: Install and Uninstall

MY OPINION Util but not so integrated with Eclipse.

I suggest to permit user to specify in filter menu also no source classes but in classpath of...

Class diagram I was just looking to create the class diagrams from the package.

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